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Thread: apt-get dist-upgrade fails




apt-get dist-upgrade fails
country flaguser name
United States
2008-04-24 16:38:16
Runnning OSX Tiger I get the following error when running
apt-get 
dist-upgrade fails:


Preparing to replace imagemagick 6.3.2-1002 (using 
.../imagemagick_6.3.8-1002_darwin-i386.deb) ...
Unpacking replacement imagemagick ...
Preparing to replace imagemagick10-shlibs 6.3.2-1002 (using

.../imagemagick10-shlibs_6.3.8-1001_darwin-i386.deb) ...
Unpacking replacement imagemagick10-shlibs ...
/sw/bin/dpkg: error processing 
/sw/var/cache/apt/archives/imagemagick10-shlibs_6.3.8-1001_d
arwin-i386.deb 
(--unpack):
 trying to overwrite `/sw/lib/libMagick++.1.dylib', which is
also in 
package imagemagick1-shlibs
/sw/bin/dpkg-deb: subprocess paste killed by signal (Broken
pipe)
Preparing to replace libcurl3-unified-shlibs 7.15.5-4 (using

.../libcurl3-unified-shlibs_7.15.5-5_darwin-i386.deb) ...
Unpacking replacement libcurl3-unified-shlibs ...
Preparing to replace libgmpxx4-shlibs 4.2.1-1008 (using 
.../libgmpxx4-shlibs_4.2.1-1009_darwin-i386.deb) ...
Unpacking replacement libgmpxx4-shlibs ...
Preparing to replace libkpathsea4 3.0-1007 (using 
.../libkpathsea4_3.5.6-1_darwin-i386.deb) ...
install-info(kpathsea.info): deleting entry `* Kpathsea:
(kpathsea) ...'
Unpacking replacement libkpathsea4 ...
Preparing to replace libkpathsea4-shlibs 3.0-1007 (using 
.../libkpathsea4-shlibs_3.5.6-1_darwin-i386.deb) ...
Unpacking replacement libkpathsea4-shlibs ...
Preparing to replace netpbm10 10.26.39-2 (using 
.../netpbm10_10.26.39-4_darwin-i386.deb) ...
Unpacking replacement netpbm10 ...
Preparing to replace netpbm-bin 10.26.39-2 (using 
.../netpbm-bin_10.26.39-4_darwin-i386.deb) ...
Unpacking replacement netpbm-bin ...
Preparing to replace netpbm10-shlibs 10.26.39-2 (using 
.../netpbm10-shlibs_10.26.39-4_darwin-i386.deb) ...
Unpacking replacement netpbm10-shlibs ...
Preparing to replace netpbm-shlibs 9.25-14 (using 
.../netpbm-shlibs_9.25-15_darwin-i386.deb) ...
Unpacking replacement netpbm-shlibs ...
Preparing to replace opensp4-dev 1.5.1-1005 (using 
.../opensp4-dev_1.5.1-1006_darwin-i386.deb) ...
Unpacking replacement opensp4-dev ...
Preparing to replace opensp4 1.5.1-1005 (using 
.../opensp4_1.5.1-1006_darwin-i386.deb) ...
Unpacking replacement opensp4 ...
Preparing to replace opensp4-shlibs 1.5.1-1005 (using 
.../opensp4-shlibs_1.5.1-1006_darwin-i386.deb) ...
Unpacking replacement opensp4-shlibs ...
Preparing to replace passwd 20070204-11 (using 
.../passwd_20070804-11_darwin-i386.deb) ...
Unpacking replacement passwd ...
Preparing to replace python 1:2.5.1-1 (using 
.../python_1%3a2.5.2-1_darwin-i386.deb) ...
Unpacking replacement python ...
Preparing to replace python25-socket 1:2.5.1-1 (using 
.../python25-socket_1%3a2.5.1-3_darwin-i386.deb) ...
Unpacking replacement python25-socket ...
Errors were encountered while processing:
 /sw/var/cache/apt/archives/imagemagick10-shlibs_6.3.8-1001_
darwin-i386.deb
E: Sub-process /sw/bin/dpkg returned an error code (1)

Sorry, not too familiar with what logs etc. to send but
would be happy 
to if any further info is required.

Thanks !
Iain


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Re: apt-get dist-upgrade fails
country flaguser name
United States
2008-04-24 17:06:19
Actually, when I run it again it seems to be resolved or at
least skip 
the part it was choking on..however after fink selfupdate I
get the 
following in my environment when I startup a new shell:

*******************************************
Fatal Error: Incomplete libtbx environment!
*******************************************
Please re-run the libtbx/configure.py command.


Any ideas ?

Thanks,
Iain

Iain Kerr wrote:
> Runnning OSX Tiger I get the following error when
running apt-get 
> dist-upgrade fails:
>
>
> Preparing to replace imagemagick 6.3.2-1002 (using 
> .../imagemagick_6.3.8-1002_darwin-i386.deb) ...
> Unpacking replacement imagemagick ...
> Preparing to replace imagemagick10-shlibs 6.3.2-1002
(using 
> .../imagemagick10-shlibs_6.3.8-1001_darwin-i386.deb)
...
> Unpacking replacement imagemagick10-shlibs ...
> /sw/bin/dpkg: error processing 
>
/sw/var/cache/apt/archives/imagemagick10-shlibs_6.3.8-1001_d
arwin-i386.deb 
> (--unpack):
> trying to overwrite `/sw/lib/libMagick++.1.dylib',
which is also in 
> package imagemagick1-shlibs
> /sw/bin/dpkg-deb: subprocess paste killed by signal
(Broken pipe)
> Preparing to replace libcurl3-unified-shlibs 7.15.5-4
(using 
> .../libcurl3-unified-shlibs_7.15.5-5_darwin-i386.deb)
...
> Unpacking replacement libcurl3-unified-shlibs ...
> Preparing to replace libgmpxx4-shlibs 4.2.1-1008 (using

> .../libgmpxx4-shlibs_4.2.1-1009_darwin-i386.deb) ...
> Unpacking replacement libgmpxx4-shlibs ...
> Preparing to replace libkpathsea4 3.0-1007 (using 
> .../libkpathsea4_3.5.6-1_darwin-i386.deb) ...
> install-info(kpathsea.info): deleting entry `*
Kpathsea: (kpathsea) ...'
> Unpacking replacement libkpathsea4 ...
> Preparing to replace libkpathsea4-shlibs 3.0-1007
(using 
> .../libkpathsea4-shlibs_3.5.6-1_darwin-i386.deb) ...
> Unpacking replacement libkpathsea4-shlibs ...
> Preparing to replace netpbm10 10.26.39-2 (using 
> .../netpbm10_10.26.39-4_darwin-i386.deb) ...
> Unpacking replacement netpbm10 ...
> Preparing to replace netpbm-bin 10.26.39-2 (using 
> .../netpbm-bin_10.26.39-4_darwin-i386.deb) ...
> Unpacking replacement netpbm-bin ...
> Preparing to replace netpbm10-shlibs 10.26.39-2 (using

> .../netpbm10-shlibs_10.26.39-4_darwin-i386.deb) ...
> Unpacking replacement netpbm10-shlibs ...
> Preparing to replace netpbm-shlibs 9.25-14 (using 
> .../netpbm-shlibs_9.25-15_darwin-i386.deb) ...
> Unpacking replacement netpbm-shlibs ...
> Preparing to replace opensp4-dev 1.5.1-1005 (using 
> .../opensp4-dev_1.5.1-1006_darwin-i386.deb) ...
> Unpacking replacement opensp4-dev ...
> Preparing to replace opensp4 1.5.1-1005 (using 
> .../opensp4_1.5.1-1006_darwin-i386.deb) ...
> Unpacking replacement opensp4 ...
> Preparing to replace opensp4-shlibs 1.5.1-1005 (using 
> .../opensp4-shlibs_1.5.1-1006_darwin-i386.deb) ...
> Unpacking replacement opensp4-shlibs ...
> Preparing to replace passwd 20070204-11 (using 
> .../passwd_20070804-11_darwin-i386.deb) ...
> Unpacking replacement passwd ...
> Preparing to replace python 1:2.5.1-1 (using 
> .../python_1%3a2.5.2-1_darwin-i386.deb) ...
> Unpacking replacement python ...
> Preparing to replace python25-socket 1:2.5.1-1 (using 
> .../python25-socket_1%3a2.5.1-3_darwin-i386.deb) ...
> Unpacking replacement python25-socket ...
> Errors were encountered while processing:
>
/sw/var/cache/apt/archives/imagemagick10-shlibs_6.3.8-1001_d
arwin-i386.deb 
>
> E: Sub-process /sw/bin/dpkg returned an error code (1)
>
> Sorry, not too familiar with what logs etc. to send but
would be happy 
> to if any further info is required.
>
> Thanks !
> Iain
>
>

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Re: apt-get dist-upgrade fails
country flaguser name
United States
2008-04-24 18:09:47
That looks like you saved a command in your shell
accidentally.   
Either edit or remove
~/Library/Preferences/com.apple.Terminal.plist

On Apr 24, 2008, at 6:06 PM, Iain Kerr wrote:

> Actually, when I run it again it seems to be resolved
or at least skip
> the part it was choking on..however after fink
selfupdate I get the
> following in my environment when I startup a new
shell:
>
> *******************************************
> Fatal Error: Incomplete libtbx environment!
> *******************************************
> Please re-run the libtbx/configure.py command.
>
>
> Any ideas ?
>
> Thanks,
> Iain
>
> Iain Kerr wrote:
>> Runnning OSX Tiger I get the following error when
running apt-get
>> dist-upgrade fails:
>>
>>
>> Preparing to replace imagemagick 6.3.2-1002 (using
>> .../imagemagick_6.3.8-1002_darwin-i386.deb) ...
>> Unpacking replacement imagemagick ...
>> Preparing to replace imagemagick10-shlibs
6.3.2-1002 (using
>>
.../imagemagick10-shlibs_6.3.8-1001_darwin-i386.deb) ...
>> Unpacking replacement imagemagick10-shlibs ...
>> /sw/bin/dpkg: error processing
>>
/sw/var/cache/apt/archives/imagemagick10-shlibs_6.3.8-1001_d
arwin- 
>> i386.deb
>> (--unpack):
>> trying to overwrite `/sw/lib/libMagick++.1.dylib',
which is also in
>> package imagemagick1-shlibs
>> /sw/bin/dpkg-deb: subprocess paste killed by signal
(Broken pipe)
>> Preparing to replace libcurl3-unified-shlibs
7.15.5-4 (using
>>
.../libcurl3-unified-shlibs_7.15.5-5_darwin-i386.deb) ...
>> Unpacking replacement libcurl3-unified-shlibs ...
>> Preparing to replace libgmpxx4-shlibs 4.2.1-1008
(using
>> .../libgmpxx4-shlibs_4.2.1-1009_darwin-i386.deb)
...
>> Unpacking replacement libgmpxx4-shlibs ...
>> Preparing to replace libkpathsea4 3.0-1007 (using
>> .../libkpathsea4_3.5.6-1_darwin-i386.deb) ...
>> install-info(kpathsea.info): deleting entry `*
Kpathsea:  
>> (kpathsea) ...'
>> Unpacking replacement libkpathsea4 ...
>> Preparing to replace libkpathsea4-shlibs 3.0-1007
(using
>> .../libkpathsea4-shlibs_3.5.6-1_darwin-i386.deb)
...
>> Unpacking replacement libkpathsea4-shlibs ...
>> Preparing to replace netpbm10 10.26.39-2 (using
>> .../netpbm10_10.26.39-4_darwin-i386.deb) ...
>> Unpacking replacement netpbm10 ...
>> Preparing to replace netpbm-bin 10.26.39-2 (using
>> .../netpbm-bin_10.26.39-4_darwin-i386.deb) ...
>> Unpacking replacement netpbm-bin ...
>> Preparing to replace netpbm10-shlibs 10.26.39-2
(using
>> .../netpbm10-shlibs_10.26.39-4_darwin-i386.deb)
...
>> Unpacking replacement netpbm10-shlibs ...
>> Preparing to replace netpbm-shlibs 9.25-14 (using
>> .../netpbm-shlibs_9.25-15_darwin-i386.deb) ...
>> Unpacking replacement netpbm-shlibs ...
>> Preparing to replace opensp4-dev 1.5.1-1005 (using
>> .../opensp4-dev_1.5.1-1006_darwin-i386.deb) ...
>> Unpacking replacement opensp4-dev ...
>> Preparing to replace opensp4 1.5.1-1005 (using
>> .../opensp4_1.5.1-1006_darwin-i386.deb) ...
>> Unpacking replacement opensp4 ...
>> Preparing to replace opensp4-shlibs 1.5.1-1005
(using
>> .../opensp4-shlibs_1.5.1-1006_darwin-i386.deb) ...
>> Unpacking replacement opensp4-shlibs ...
>> Preparing to replace passwd 20070204-11 (using
>> .../passwd_20070804-11_darwin-i386.deb) ...
>> Unpacking replacement passwd ...
>> Preparing to replace python 1:2.5.1-1 (using
>> .../python_1%3a2.5.2-1_darwin-i386.deb) ...
>> Unpacking replacement python ...
>> Preparing to replace python25-socket 1:2.5.1-1
(using
>> .../python25-socket_1%3a2.5.1-3_darwin-i386.deb)
...
>> Unpacking replacement python25-socket ...
>> Errors were encountered while processing:
>>
/sw/var/cache/apt/archives/imagemagick10-shlibs_6.3.8-1001_d
arwin- 
>> i386.deb
>>
>> E: Sub-process /sw/bin/dpkg returned an error code
(1)
>>
>> Sorry, not too familiar with what logs etc. to send
but would be  
>> happy
>> to if any further info is required.
>>
>> Thanks !
>> Iain
>>
>>
>
>
------------------------------------------------------------
-------------
> This SF.net email is sponsored by the 2008 JavaOne(SM)
Conference
> Don't miss this year's exciting event. There's still
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> $100.
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57673;13503038;p?http://java.sun.com/javaone
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> Fink-beginnerslists.sourceforge.net
> h
ttp://news.gmane.org/gmane.os.apple.fink.beginners


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Re: apt-get dist-upgrade fails
country flaguser name
United States
2008-04-24 18:52:08
It appears that commenting out the last three of the four
lines below in 
my .cshrc fixes the problem:

# check for Fink
#if (-d /sw) then
#source /sw/bin/init.csh
#endif

Something wrong in init.csh I guess (attached)...any idea
what is going 
wrong ? it does not seem to affect my environment if I don't
have it 
sourced...

Iain

Alexander Hansen wrote:
> That looks like you saved a command in your shell
accidentally.  
> Either edit or remove
~/Library/Preferences/com.apple.Terminal.plist
>
> On Apr 24, 2008, at 6:06 PM, Iain Kerr wrote:
>
>> Actually, when I run it again it seems to be
resolved or at least skip
>> the part it was choking on..however after fink
selfupdate I get the
>> following in my environment when I startup a new
shell:
>>
>> *******************************************
>> Fatal Error: Incomplete libtbx environment!
>> *******************************************
>> Please re-run the libtbx/configure.py command.
>>
>>
>> Any ideas ?
>>
>> Thanks,
>> Iain
>>
>> Iain Kerr wrote:
>>> Runnning OSX Tiger I get the following error
when running apt-get
>>> dist-upgrade fails:
>>>
>>>
>>> Preparing to replace imagemagick 6.3.2-1002
(using
>>> .../imagemagick_6.3.8-1002_darwin-i386.deb)
...
>>> Unpacking replacement imagemagick ...
>>> Preparing to replace imagemagick10-shlibs
6.3.2-1002 (using
>>>
.../imagemagick10-shlibs_6.3.8-1001_darwin-i386.deb) ...
>>> Unpacking replacement imagemagick10-shlibs ...
>>> /sw/bin/dpkg: error processing
>>>
/sw/var/cache/apt/archives/imagemagick10-shlibs_6.3.8-1001_d
arwin-i386.deb 
>>>
>>> (--unpack):
>>> trying to overwrite
`/sw/lib/libMagick++.1.dylib', which is also in
>>> package imagemagick1-shlibs
>>> /sw/bin/dpkg-deb: subprocess paste killed by
signal (Broken pipe)
>>> Preparing to replace libcurl3-unified-shlibs
7.15.5-4 (using
>>>
.../libcurl3-unified-shlibs_7.15.5-5_darwin-i386.deb) ...
>>> Unpacking replacement libcurl3-unified-shlibs
...
>>> Preparing to replace libgmpxx4-shlibs
4.2.1-1008 (using
>>>
.../libgmpxx4-shlibs_4.2.1-1009_darwin-i386.deb) ...
>>> Unpacking replacement libgmpxx4-shlibs ...
>>> Preparing to replace libkpathsea4 3.0-1007
(using
>>> .../libkpathsea4_3.5.6-1_darwin-i386.deb) ...
>>> install-info(kpathsea.info): deleting entry `*
Kpathsea: (kpathsea) 
>>> ...'
>>> Unpacking replacement libkpathsea4 ...
>>> Preparing to replace libkpathsea4-shlibs
3.0-1007 (using
>>>
.../libkpathsea4-shlibs_3.5.6-1_darwin-i386.deb) ...
>>> Unpacking replacement libkpathsea4-shlibs ...
>>> Preparing to replace netpbm10 10.26.39-2
(using
>>> .../netpbm10_10.26.39-4_darwin-i386.deb) ...
>>> Unpacking replacement netpbm10 ...
>>> Preparing to replace netpbm-bin 10.26.39-2
(using
>>> .../netpbm-bin_10.26.39-4_darwin-i386.deb) ...
>>> Unpacking replacement netpbm-bin ...
>>> Preparing to replace netpbm10-shlibs 10.26.39-2
(using
>>> .../netpbm10-shlibs_10.26.39-4_darwin-i386.deb)
...
>>> Unpacking replacement netpbm10-shlibs ...
>>> Preparing to replace netpbm-shlibs 9.25-14
(using
>>> .../netpbm-shlibs_9.25-15_darwin-i386.deb) ...
>>> Unpacking replacement netpbm-shlibs ...
>>> Preparing to replace opensp4-dev 1.5.1-1005
(using
>>> .../opensp4-dev_1.5.1-1006_darwin-i386.deb)
...
>>> Unpacking replacement opensp4-dev ...
>>> Preparing to replace opensp4 1.5.1-1005 (using
>>> .../opensp4_1.5.1-1006_darwin-i386.deb) ...
>>> Unpacking replacement opensp4 ...
>>> Preparing to replace opensp4-shlibs 1.5.1-1005
(using
>>> .../opensp4-shlibs_1.5.1-1006_darwin-i386.deb)
...
>>> Unpacking replacement opensp4-shlibs ...
>>> Preparing to replace passwd 20070204-11 (using
>>> .../passwd_20070804-11_darwin-i386.deb) ...
>>> Unpacking replacement passwd ...
>>> Preparing to replace python 1:2.5.1-1 (using
>>> .../python_1%3a2.5.2-1_darwin-i386.deb) ...
>>> Unpacking replacement python ...
>>> Preparing to replace python25-socket 1:2.5.1-1
(using
>>>
.../python25-socket_1%3a2.5.1-3_darwin-i386.deb) ...
>>> Unpacking replacement python25-socket ...
>>> Errors were encountered while processing:
>>>
/sw/var/cache/apt/archives/imagemagick10-shlibs_6.3.8-1001_d
arwin-i386.deb 
>>>
>>>
>>> E: Sub-process /sw/bin/dpkg returned an error
code (1)
>>>
>>> Sorry, not too familiar with what logs etc. to
send but would be happy
>>> to if any further info is required.
>>>
>>> Thanks !
>>> Iain
>>>
>>>
>>
>>
------------------------------------------------------------
------------- 
>>
>> This SF.net email is sponsored by the 2008
JavaOne(SM) Conference
>> Don't miss this year's exciting event. There's
still time to save $100.
>> Use priority code J8TL2D2.
>> http://ad.doubleclick.net/clk;1987
57673;13503038;p?http://java.sun.com/javaone 
>>
>> _______________________________________________
>> Fink-beginners mailing list
>> Fink-beginnerslists.sourceforge.net
>> h
ttp://news.gmane.org/gmane.os.apple.fink.beginners
>
>

------------------------------------------------------------
-------------
This SF.net email is sponsored by the 2008 JavaOne(SM)
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Re: apt-get dist-upgrade fails
country flaguser name
United States
2008-04-24 19:36:17
On Apr 24, 2008, at 7:52 PM, Iain Kerr wrote:

> It appears that commenting out the last three of the
four lines  
> below in my .cshrc fixes the problem:
>
> # check for Fink
> #if (-d /sw) then
> #source /sw/bin/init.csh
> #endif
>
> Something wrong in init.csh I guess (attached)...any
idea what is  
> going wrong ? it does not seem to affect my environment
if I don't  
> have it sourced...
>
> Iain
>
> Alexander Hansen wrote:
>> That looks like you saved a command in your shell
accidentally.   
>> Either edit or remove
~/Library/Preferences/com.apple.Terminal.plist
>>
>> On Apr 24, 2008, at 6:06 PM, Iain Kerr wrote:
>>
>>> Actually, when I run it again it seems to be
resolved or at least  
>>> skip
>>> the part it was choking on..however after fink
selfupdate I get the
>>> following in my environment when I startup a
new shell:
>>>
>>> *******************************************
>>> Fatal Error: Incomplete libtbx environment!
>>> *******************************************
>>> Please re-run the libtbx/configure.py command.
>>>
>>>
>>> Any ideas ?
>>>
>>> Thanks,
>>> Iain
>>>
>>>

<snip>

> # read per-package scripts from /sw/etc/profile.d
> if ( -d /sw/etc/profile.d ) then
>  set nonomatch
>  foreach i ( /sw/etc/profile.d/*.csh )
>    if ( -r $i && -x $i ) then
>      source $i
>    endif
>  end
>  unset i nonomatch
> endif
>
> # eof

Best I can tell it's from one of these scripts.  Try
"dpkg -S libtbx/ 
configure.py" to see what package it's from.

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Re: apt-get dist-upgrade fails
country flaguser name
France
2008-04-25 01:38:30
Iain Kerr wrote:
> Actually, when I run it again it seems to be resolved
or at least skip 
> the part it was choking on..however after fink
selfupdate I get the 
> following in my environment when I startup a new
shell:
> 
> *******************************************
> Fatal Error: Incomplete libtbx environment!
> *******************************************
> Please re-run the libtbx/configure.py command.

This comes from the cctbx-10.4 (or *-10.5) package that
installs startup 
scripts in /sw/etc/profile.d. You can try what it suggests,
namely run 
the postinst script again by reinstalling the package:

   sudo apt-get install --reinstall cctbx-10.5

(replace 10.5 by 10.4 if you are running Tiger)

You can also run that postinst script by hand:

   sudo /sw/var/lib/dpkg/info/cctbx-10.5.postinst

If all fails, remove the cctbx.{csh,sh} scripts in
/sw/etc/profile.d/

I am CCing the maintainer; he might have a more precise
idea.

-- 
Martin




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Re: apt-get dist-upgrade fails
country flaguser name
United States
2008-04-25 07:56:16
Hi Iain:

Martin is correct.

The best solution is to issue
"fink remove cctbx cctbx-10.4  cctbx-10.5"

If the problem persists after a reinstall (assuming you
still want it;  
I put this together before phenix was available for os x),
please let  
me know immediately.

Bill




On Apr 24, 2008, at 11:38 PM, Martin Costabel wrote:

> Iain Kerr wrote:
>> Actually, when I run it again it seems to be
resolved or at least  
>> skip the part it was choking on..however after fink
selfupdate I  
>> get the following in my environment when I startup
a new shell:
>> *******************************************
>> Fatal Error: Incomplete libtbx environment!
>> *******************************************
>> Please re-run the libtbx/configure.py command.
>
> This comes from the cctbx-10.4 (or *-10.5) package that
installs  
> startup scripts in /sw/etc/profile.d. You can try what
it suggests,  
> namely run the postinst script again by reinstalling
the package:
>
>  sudo apt-get install --reinstall cctbx-10.5
>
> (replace 10.5 by 10.4 if you are running Tiger)
>
> You can also run that postinst script by hand:
>
>  sudo /sw/var/lib/dpkg/info/cctbx-10.5.postinst
>
> If all fails, remove the cctbx.{csh,sh} scripts in
/sw/etc/profile.d/
>
> I am CCing the maintainer; he might have a more precise
idea.
>
> -- 
> Martin
>
>


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