download bacterial genomes

A few whole-genome databases can be accessed from a single
site:

   http://www.bio-mirror.net/


And they're a little more willing to accept regular
connections.  If you're 
using Unix, the simplest approach is to run
"wget" as a cron job.  "rsync" is a 
step up from that.  SRS may be worth looking into, too.  All
of this can be 
found at the above site.

Jeff

ibtissem grissa wrote:
> 
> I want to download all bacterial genomes available
(published and non 
> published) in fasta format in order to store them in a
database,
> I want to cluster them (as actinobacteria,
bacteroidetes,... ) 
> automatically.
> 
> Could someone please suggest me a web site where I can
download all 
> these information easily (a simple perl program)? I
Would really 
> appreciate it.
> 
> Thank you,
> -- 
> Ibtissem

-- 
J.W. Bizzaro
Bioinformatics Organization, Inc. (Bioinformatics.Org)
E-mail: jeffbioinformatics.org
Phone:  +1 508 890 8600
--
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Biodevelopers mailing list
Biodevelopersbioinformatics.org
https://bioinformatics.org/mailman/listinfo/biodevelope
rs

On Mon, Jun 19, 2006 at 10:12:31AM -0400, J.W. Bizzaro
wrote:
-> A few whole-genome databases can be accessed from a
single site:
-> 
->   http://www.bio-mirror.net/

-> 
-> And they're a little more willing to accept regular
connections.  If you're 
-> using Unix, the simplest approach is to run
"wget" as a cron job.  "rsync" 
-> is a step up from that.  SRS may be worth looking
into, too.  All of this 
-> can be found at the above site.

What about:

ftp://ftp.ncbi.nlm.nih.gov/genomes/Bacteria

?  Or you could look at TIGR and JGI sites; JGI in
particular may have a
few that aren't anywhere else.

--titus

-> ibtissem grissa wrote:
-> >
-> >I want to download all bacterial genomes available
(published and non 
-> >published) in fasta format in order to store them
in a database,
-> >I want to cluster them (as actinobacteria,
bacteroidetes,... ) 
-> >automatically.
-> >
-> >Could someone please suggest me a web site where I
can download all 
-> >these information easily (a simple perl program)?
I Would really 
-> >appreciate it.
-> >
-> >Thank you,
-> >-- 
-> >Ibtissem
-> 
-> -- 
-> J.W. Bizzaro
-> Bioinformatics Organization, Inc. (Bioinformatics.Org)
-> E-mail: jeffbioinformatics.org
-> Phone:  +1 508 890 8600
-> --
-> _______________________________________________
-> Biodevelopers mailing list
-> Biodevelopersbioinformatics.org
-> https://bioinformatics.org/mailman/listinfo/biodevelope
rs
-> 
_______________________________________________
Biodevelopers mailing list
Biodevelopersbioinformatics.org
https://bioinformatics.org/mailman/listinfo/biodevelope
rs