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Thread: Assembly programs
Assembly programs
user name
 2006-07-12 06:08:24 
Sanger still does our WGS assembly work on single large
memory  
machines (SGI Altix, in our case).  Any small memory
properly  
parallel alternative is definitely interesting though, so
I'll have a  
look at Euler.  Getting those change-fearing users to
actually use it  
might be a challenge, of course...

Tim
_______________________________________________
Bioclusters maillist  -  Bioclustersbioinformatics.org
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Assembly programs
user name
 2006-07-13 07:29:00 

  


  

    We at the Joint Genome Institute use JAZZ (our homegrown assembler) which runs well on a linux cluster consisting of amd dual core (~4 gigs of mem per node) and intel xeon (~2 gigs of mem per node). 


On 7/11/06, Tim Cutts <sanger.ac.uk">tjrcsanger.ac.uk> wrote:

Sanger still does our WGS assembly work on single large memory
machines (SGI Altix, in our case).&nbsp; Any small memory properly
parallel alternative is definitely interesting though, so I'll have a
look at Euler.&nbsp; Getting those change-fearing users to actually use it

might be a challenge, of course...

Tim
_______________________________________________
Bioclusters maillist&nbsp; -  ;bioinformatics.org">Bioclustersbioinformatics.org

https://bioinformatics.org/mailman/listinfo/bioclusters



  

  
  
   
     
    






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