Matthias Samwald wrote:
> * Add connections between RDF/OWL resources that I have
overlooked so
> far, based on the criteria described on the wiki page:
"Only make
> connections where there really are substantial
connections on the RDF
> level, i.e. relations spanning the two ontologies. As a
counter-example,
> several ontologies have some kind of mapping or
annotation with Uniprot
> entries, but since Uniprot RDF and these ontologies do
not use the same
> URIs, these are not shown as connections. If two
ontologies are mapped
> in a separate mapping file, there should be a direct
connection between
> both ontologies and the mapping file should not be
depicted. Connections
> should also be omitted if the number of actual
relations is minimal
> (e.g. only one or two). If in doubt, do not introduce a
connection."
> (ht
tp://esw.w3.org/topic/HCLS/HCLS_semantic_web_map)
Two suggestions:
1. UniProt is not one database, but several (some of which
may be
"duplicated" elsewhere in your map, and some are
"duplicates" themselves).
It may therefore be worth adding these relationships to your
map:
UniProtKB (UniProt) -- UniRef (UniProt)
UniProtKB (UniProt) -- UniParc (UniProt)
UniProtKB (UniProt) -- Taxonomy (UniProt)
UniProtKB (UniProt) -- Keywords (UniProt)
UniProtKB (UniProt) -- Pathways (UniProt)
UniProtKB (UniProt) -- GO (UniProt)
Keywords (UniProt) -- GO (UniProt)
UniRef (UniProt) -- Taxonomy (UniProt)
UniParc (UniProt) -- Taxonomy (UniProt)
UniProtKB (UniProt) -- Citations (UniProt)
UniProtKB (UniProt) -- Enzyme (UniProt)
2. I've created some mappings between the UniProt RDF
distribution and
several RDFified databases hosted by bio2rdf:
<http://dev.isb-sib.ch/projects/uniprot-rdf/mappings/>
This would allow us to add the following connections:
UniProtKB (UniProt) -- OMIM (bio2rdf)
UniProtKB (UniProt) -- PDB (bio2rdf)
UniProtKB (UniProt) -- MGI (bio2rdf)
UniProtKB (UniProt) -- GenBank (bio2rdf)
Also, these, but they seem to be broken on the bio2rdf
server right now:
Citations (UniProt) -- PubMed (bio2rdf)
UniProtKB (UniProt) -- InterPro (bio2rdf)
UniProtKB (UniProt) -- Ensembl (bio2rdf)
What do you think?
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